BtaEX6009520 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34677616-34681548:-
Coord C1 exon
chr2:34681448-34681548
Coord A exon
chr2:34678320-34678494
Coord C2 exon
chr2:34677616-34677749
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCCCCCTGTCTTAGGCT
3' ss Score
9.77
5' ss Seq
ATAGTACGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GAGAAGAGGAAGATTCCTGCTGTACCAAATGGAACAGCAGCTCATGGGGAAGCTGAGCCCCATGGAGGACATAGTGGACCTGAACTCCAGCGAACTGGAAG
Seq A exon
GCTTTTTGGGGGACTTATTTTAGATATCAAAAGAAAAGCTCCATACTTCTGGAGTGACTTCACAGATGCTCTCAGCCTGCAGTGTTTAGCGTCTTTTCTGTTTCTCTACTGCGCATGTATGTCTCCTGTCATCACATTTGGAGGACTGCTGGGAGAAGCAACTGAGGGTCGAATA
Seq C2 exon
AGTGCAATCGAGTCTCTCTTTGGAGCATCCATGACTGGAATAGCCTATTCTCTTTTTGGTGGACAGCCTCTTACCATACTAGGCAGTACAGGACCAGTTTTGGTGTTTGAAAAGATTTTGTTTAAATTTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'12-16,'12-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
PF0095516=HCO3_cotransp=FE(11.2=100)
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATTCCTGCTGTACCAA
R:
ATCTTTTCAAACACCAAAACTGGTCC
Band lengths:
210-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]