MmuEX6101583 @ mm10
Exon Skipping
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62263953-62268274:+
Coord C1 exon
chr2:62263953-62264053
Coord A exon
chr2:62267401-62267575
Coord C2 exon
chr2:62268141-62268274
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACCCCTACCCCGTGTCCTAGGAT
3' ss Score
7.84
5' ss Seq
ATAGTATGT
5' ss Score
4.41
Exon sequences
Seq C1 exon
GAGAAGAGGAAGATTCCTGCTGTACCAAATGGAACAGCAGCTCATGGCGAAGCTGAGCCACATGGAGGACACAGCGGACCTGAACTCCAGCGAACTGGGAG
Seq A exon
GATTTTTGGGGGACTTATATTAGATATCAAAAGAAAGGCTCCATTCTTCTGGAGTGACTTCAGGGATGCTTTCAGCCTGCAGTGCTTAGCATCGTTCCTGTTTCTCTACTGTGCATGCATGTCTCCTGTCATCACATTTGGAGGACTGTTGGGAGAAGCAACTGAAGGTCGTATA
Seq C2 exon
AGTGCAATCGAATCACTCTTTGGAGCATCTATGACCGGGATAGCCTATTCTCTTTTTGGTGGACAGCCCCTGACCATATTAGGCAGCACAGGACCTGTTTTGGTGTTTGAAAAGATCTTGTTTAAGTTTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904-'21-36,'21-35,24-36
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATTCCTGCTGTACCAA
R:
TGCAAAACTTAAACAAGATCTTTTCA
Band lengths:
227-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types