RnoEX6017041 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48217221-48221268:+
Coord C1 exon
chr3:48217221-48217321
Coord A exon
chr3:48220408-48220582
Coord C2 exon
chr3:48221135-48221268
Length
175 bp
Sequences
Splice sites
3' ss Seq
CCCCCCACCCTGTGTCCTAGGAT
3' ss Score
8.32
5' ss Seq
ATAGTATGT
5' ss Score
4.41
Exon sequences
Seq C1 exon
GAGAAGAGGAAGACTCCTTCTCTACCAAATGGAACAGCGGCTCATGGCGGACCTGAGCAACATGGAGGACACAGTGGACCTGAGCTCCAGCGGACTGGGAG
Seq A exon
GATTTTTGGGGGACTTATATTAGATATCAAAAGGAAGGCTCCGTTCTTCTGGAGTGACTTCAGGGATGCTTTCAGCCTGCAGTGCTTAGCATCATTCCTGTTTCTCTACTGTGCATGTATGTCTCCTGTCATCACATTTGGAGGACTGCTGGGAGAAGCCACCGAAGGTCGTATA
Seq C2 exon
AGTGCAATCGAATCACTCTTTGGAGCATCTATGACCGGGATAGCCTATTCTCTTTTTGGTGGACAGCCCCTGACCATATTAGGCAGTACGGGACCTGTTCTGGTGTTTGAAAAGATCTTGTTTAAATTCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'21-28,'21-27,23-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.869 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Skipping Isoform:
ENSRNOT00000064344fB13726
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGACTCCTTCTCTACCAAATGG
R:
TAAACAAGATCTTTTCAAACACCAGA
Band lengths:
218-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]