GgaEX6042591 @ galGal3
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
NA
Coordinates
chr7:22793464-22795491:-
Coord C1 exon
chr7:22795391-22795491
Coord A exon
chr7:22793846-22794020
Coord C2 exon
chr7:22793464-22793597
Length
175 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTCTTTTATTTTTAGATT
3' ss Score
11.33
5' ss Seq
ATAGTATGT
5' ss Score
4.41
Exon sequences
Seq C1 exon
GAGAAGCGTAAGATCCCAGGAGTACCAAATGGGACTGCAGCTCATGGGGAACCAGAACATCCTGGAGGACACTCTGGACCAGAATTGCAACGCACTGGAAA
Seq A exon
ATTTTTTGGTGGATTGATTTTAGATATAAAAAGAAAGGCTCCATTCTTCTGGAGTGACTTCAGGGATGCTCTCAGTCTACAGTGTCTGGCATCATTTTTGTTTCTCTACTGTGCTTGCATGTCTCCTGTCATCACGTTTGGTGGTCTACTGGGAGAAGCAACTGAAGGTCGTATA
Seq C2 exon
AGTGCAATAGAATCGCTGTTTGGAGCATCCATGACTGGAATTGCCTATTCTCTCTTTGGTGGACAGCCTCTCACTATACTTGGCAGCACAGGACCAGTTCTAGTGTTTGAGAAGATTTTATTTAAATTTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'15-17,'15-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCGTAAGATCCCAGGAGT
R:
AAATCTTCTCAAACACTAGAACTGGT
Band lengths:
218-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]