DreEX6038707 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51787096-51797303:-
Coord C1 exon
chr9:51797209-51797303
Coord A exon
chr9:51791948-51792122
Coord C2 exon
chr9:51787096-51787229
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGTCTGGTGTGTTTTGTCAGGTT
3' ss Score
8
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GAGAAGAGAAAGATCCCCGCGGTGCCTAATGGAGAGCTGGCAGAGACGGAGGAACATGGTGGACACGGAGGCCCTGAGCTGCAGCGCACCGGGAG
Seq A exon
GTTATTTGGTGGATTAATTCTGGATGTGAAGCGGAAGGCTCCACACTTGCTGTCAGATTTCGGAGATGCGCTGAGCCTGCAGTGTCTGGCCTCTTTCCTGTTCCTGTACTGCGCCTGCATGTCTCCTGTGATCACCTTCGGAGGGCTGCTGGGAGAAGCAACAGAGGGACGCATA
Seq C2 exon
AGTGCAATTGAATCTCTGTTTGGAGCCTCGATGACTGGAATTGCGTATTCTCTGTTTGCTGGTCAGCCTCTCACTATTCTGGGCAGCACTGGACCTGTTCTGGTGTTTGAGAAGATATTGTTCAAATTCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=18.8)
A:
PF0095516=HCO3_cotransp=PU(11.4=98.3)
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGAGAAAGATCCCCGCG
R:
TGCAGAATTTGAACAATATCTTCTCA
Band lengths:
228-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]