BtaEX6009521 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34676970-34678494:-
Coord C1 exon
chr2:34678320-34678494
Coord A exon
chr2:34677616-34677749
Coord C2 exon
chr2:34676970-34677215
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCATTTATATCTCCACACAGAGT
3' ss Score
8.01
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCTTTTTGGGGGACTTATTTTAGATATCAAAAGAAAAGCTCCATACTTCTGGAGTGACTTCACAGATGCTCTCAGCCTGCAGTGTTTAGCGTCTTTTCTGTTTCTCTACTGCGCATGTATGTCTCCTGTCATCACATTTGGAGGACTGCTGGGAGAAGCAACTGAGGGTCGAATA
Seq A exon
AGTGCAATCGAGTCTCTCTTTGGAGCATCCATGACTGGAATAGCCTATTCTCTTTTTGGTGGACAGCCTCTTACCATACTAGGCAGTACAGGACCAGTTTTGGTGTTTGAAAAGATTTTGTTTAAATTTTGCAA
Seq C2 exon
AGAATATGGGCTATCATACCTGTCTTTAAGAGCTAGTATTGGACTTTGGACTGCAACCCTGTGTATCATACTTGTGGCCACTGATGCAAGCTCCCTTGTCTGCTATATCACCCGGTTTACTGAAGAAGCTTTTGCTTCTCTTATTTGCATCATTTTCATTTATGAGGCCCTAGAGAAGTTGTTTGAACTCAGCGAAGCATATCCAATCAACATGCATAATGATTTGGAACTGCTGACACAGTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.2=100)
A:
PF0095516=HCO3_cotransp=FE(8.5=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTTGGAGGACTGCTGGG
R:
TGCTTCGCTGAGTTCAAACAAC
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]