GgaEX6042592 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20711342-20712639:-
Coord C1 exon
chr7:20712465-20712639
Coord A exon
chr7:20712083-20712216
Coord C2 exon
chr7:20711342-20711587
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGTATCATATTCAGAGT
3' ss Score
8.09
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATTTTTTGGTGGATTGATTTTAGATATAAAAAGAAAGGCTCCATTCTTCTGGAGTGACTTCAGGGATGCTCTCAGTCTACAGTGTCTGGCATCATTTTTGTTTCTCTACTGTGCTTGCATGTCTCCTGTCATCACGTTTGGTGGTCTACTGGGAGAAGCAACTGAAGGTCGTATA
Seq A exon
AGTGCAATAGAATCGCTGTTTGGAGCATCCATGACTGGAATTGCCTATTCTCTCTTTGGTGGACAGCCTCTCACTATACTTGGCAGCACAGGACCAGTTCTAGTGTTTGAGAAGATTTTATTTAAATTTTGCAA
Seq C2 exon
AGAGTATGGATTATCATACCTTTCCCTGAGAGCTAGCATTGGACTGTGGACTGCAATCCTGTGTATCATCCTTGTTGCAACTGATGCAAGCTCCCTAGTCTGTTACATTACCCGGTTTACTGAAGAAGCTTTTGCTTCTCTTATCTGCATAATTTTCATTTATGAGGCCTTAGAGAAGCTATTTCATCTCAGTGAGACATATCCAATCAACATGCATAATGATTTGGACCTGCTGACTAAGTATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'15-19,'15-18,16-19=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(8.5=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGACTTCAGGGATGCT
R:
AGCTTCTTCAGTAAACCGGGT
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]