MmuEX6101582 @ mm9
Exon Skipping
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62105458-62106963:+
Coord C1 exon
chr2:62105458-62105632
Coord A exon
chr2:62106198-62106331
Coord C2 exon
chr2:62106718-62106963
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATCCATTCATATTTTTTCAGAGT
3' ss Score
7
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GATTTTTGGGGGACTTATATTAGATATCAAAAGAAAGGCTCCATTCTTCTGGAGTGACTTCAGGGATGCTTTCAGCCTGCAGTGCTTAGCATCGTTCCTGTTTCTCTACTGTGCATGCATGTCTCCTGTCATCACATTTGGAGGACTGTTGGGAGAAGCAACTGAAGGTCGTATA
Seq A exon
AGTGCAATCGAATCACTCTTTGGAGCATCTATGACCGGGATAGCCTATTCTCTTTTTGGTGGACAGCCCCTGACCATATTAGGCAGCACAGGACCTGTTTTGGTGTTTGAAAAGATCTTGTTTAAGTTTTGCAA
Seq C2 exon
GGAATACGGCCTGTCGTACTTGTCCTTACGGGCCAGCATTGGGCTCTGGACTGCAACACTGTGCATCATCCTTGTGGCCACGGACGCGAGCTCACTCGTCTGCTACATCACCCGGTTTACCGAAGAGGCTTTTGCTTCTCTCATTTGCATCATTTTTATCTATGAAGCCCTGGAGAAGTTGTTTGAGCTCAGTGAAACCTATCCAATCAATATGCACAATGATTTGGAACTGCTGACACAATACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904-'15-19,'15-18,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(8.5=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGACTTCAGGGATGCT
R:
AAACCGGGTGATGTAGCAGAC
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: