DreEX6038708 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51785473-51792122:-
Coord C1 exon
chr9:51791948-51792122
Coord A exon
chr9:51787096-51787229
Coord C2 exon
chr9:51785473-51785718
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCTCTCTCTTCCCAGAGT
3' ss Score
11.54
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTATTTGGTGGATTAATTCTGGATGTGAAGCGGAAGGCTCCACACTTGCTGTCAGATTTCGGAGATGCGCTGAGCCTGCAGTGTCTGGCCTCTTTCCTGTTCCTGTACTGCGCCTGCATGTCTCCTGTGATCACCTTCGGAGGGCTGCTGGGAGAAGCAACAGAGGGACGCATA
Seq A exon
AGTGCAATTGAATCTCTGTTTGGAGCCTCGATGACTGGAATTGCGTATTCTCTGTTTGCTGGTCAGCCTCTCACTATTCTGGGCAGCACTGGACCTGTTCTGGTGTTTGAGAAGATATTGTTCAAATTCTGCAA
Seq C2 exon
GGAATACGGTCTGTCATACCTGTCGCTCAGGGTGTGTATCGGGCTGTGGACAGCCTTCCTCTGTCTGCTGCTGGTGGCCACCGATGCCAGTTCACTGGTCTGTTACATCACACGCTTCACGGAGGAAGCCTTCGCCTCGCTCATCTGCATCATCTTCATCTACGAGGCCATCGAGAAGCTCATTCACCTTGGAGAAACATACCAGTTTAATAAGAACAACAATCTGGACAAACTCACCACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(11.4=98.3)
A:
PF0095516=HCO3_cotransp=FE(8.5=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCTGGCCTCTTTCCTGT
R:
GATGATGCAGATGAGCGAGGC
Band lengths:
249-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]