RnoEX0082777 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48220408-48221905:+
Coord C1 exon
chr3:48220408-48220582
Coord A exon
chr3:48221135-48221268
Coord C2 exon
chr3:48221660-48221905
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTCCATTCATGTGTTTTCAGAGT
3' ss Score
7.41
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GATTTTTGGGGGACTTATATTAGATATCAAAAGGAAGGCTCCGTTCTTCTGGAGTGACTTCAGGGATGCTTTCAGCCTGCAGTGCTTAGCATCATTCCTGTTTCTCTACTGTGCATGTATGTCTCCTGTCATCACATTTGGAGGACTGCTGGGAGAAGCCACCGAAGGTCGTATA
Seq A exon
AGTGCAATCGAATCACTCTTTGGAGCATCTATGACCGGGATAGCCTATTCTCTTTTTGGTGGACAGCCCCTGACCATATTAGGCAGTACGGGACCTGTTCTGGTGTTTGAAAAGATCTTGTTTAAATTCTGCAA
Seq C2 exon
AGAATATGGGCTGTCATACTTGTCCTTACGGGCCAGCATTGGGCTCTGGACTGCAACACTGTGCATCATACTCGTGGCCACTGATGCGAGTTCCCTTGTCTGCTATATCACCCGGTTCACTGAAGAAGCATTTGCTTCTCTCATTTGCATCATTTTTATCTATGAAGCCCTGGAGAAGTTGTTTGAGCTCAGTGAATCCTATCCAATCAATATGCACAACGACTTGGAACTGCTGACACAGTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'23-29,'23-28,24-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(8.5=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTCCGTTCTTCTGGAGT
R:
TAGCAGACAAGGGAACTCGCA
Band lengths:
246-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]