BtaEX6009567 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009080 | ITGB6
Description
Bos taurus integrin, beta 6 (ITGB6), mRNA. [Source:RefSeq mRNA;Acc:NM_174698]
Coordinates
chr2:36257395-36261222:+
Coord C1 exon
chr2:36257395-36257474
Coord A exon
chr2:36260011-36260215
Coord C2 exon
chr2:36260976-36261222
Length
205 bp
Sequences
Splice sites
3' ss Seq
TATTGTTTTTTCTCTTTTAGAAT
3' ss Score
11.86
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGGCTGTGCTGTGGGGGGTGCGGAGACCTGTGAGGACTGCTTACTCATTGGACCTCAGTGTGCCTGGTGTTCTCAGGAG
Seq A exon
AATTTTACGCACCTATCTGGAGTTGGAGAAAGATGTGATACCCCAGCAAATCTTTTAGCTAAAGGATGTCAACTAACCTTCATCGAAAACCCTGTCTCCCAAGTTGAGATACTTACAAATAAGCCTCTCAGCATAGGCAGACAGAAAAATAGCTCCGACATCGTTCAGATTTCACCTCAAAGCTTGGCTCTTAAACTGAGACCAG
Seq C2 exon
GCCTTGAACAGACCCTGCAAGTTCAAGTTCGCCAGACTGAGGATTACCCTGTGGATTTGTATTACCTCATGGACCTCTCGGCCTCCATGGACGACGACCTCAACACCATCAAAGAGCTGGGCTCCCTGCTCTCCAAGGAGATGTCTAAATTAACCAGCAACTTTAGACTGGGCTTCGGCTCTTTTGTGGAGAAACCCATCTCCCCTTTTATGAAAACAACACCAGAAGAAATCGCTAACCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009080-'6-5,'6-3,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=63.0)
A:
PF0036213=Integrin_beta=FE(16.0=100)
C2:
PF0036213=Integrin_beta=FE(19.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCTGTGAGGACTGCTT
R:
GGGTTAGCGATTTCTTCTGGTGT
Band lengths:
299-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]