GgaEX6042615 @ galGal4
Exon Skipping
Gene
ENSGALG00000011141 | ITGB6
Description
integrin, beta 6 [Source:HGNC Symbol;Acc:HGNC:6161]
Coordinates
chr7:21294433-21298446:+
Coord C1 exon
chr7:21294433-21294512
Coord A exon
chr7:21296865-21297069
Coord C2 exon
chr7:21298200-21298446
Length
205 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCCTGTTTGCTTTAGAAT
3' ss Score
10.48
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGACCTGTTCTCAGGAAAGTGGAGTGACTTGTGAAGATTGTTTGCTTTCCGGACCGCACTGTGCTTGGTGTTCCCAAGAG
Seq A exon
AATTACACAGATTCAGCTGGAATTCATGGGAGGTGTGATACCCCAGAAAATCTTTTGTCAAAAGGATGCCAGTTGCATTTGATTGAATTTCCCGTTTCAGAAGTGGAAATTCACAGAAACAAGCCTCTAACTATAGCAACCCAGAAGGACAATTCTGATGTCACTCAGATTTCTCCTCAGAAATTAACACTCAGGCTGCGACCAG
Seq C2 exon
GACATGAAGAAACAATCCAGATCAAGGTTCGGCAAAGTGAAGATTATCCAATTGATCTCTATTACCTCATGGATCTTTCAGCTTCCATGGATGATGACCTGAATACAATAAAAGAATTAGGCTCAACTCTTTCCAAAGAAATGTCAAAACTGACAAGCAACTTCAGACTGGGTTTTGGATCTTTTGTTGAAAAACCAGTTTCACCATTTATCAAAACTACCGCTGAAGAAATAAACAACCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011141-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.145 C2=0.036
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=63.0)
A:
PF0036213=Integrin_beta=FE(16.0=100)
C2:
PF0036213=Integrin_beta=FE(19.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGATTGTTTGCTTTCCGG
R:
AGGGTTGTTTATTTCTTCAGCGGT
Band lengths:
293-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]