RnoEX0045250 @ rn6
Exon Skipping
Gene
ENSRNOG00000008346 | Itgb6
Description
integrin beta 6 [Source:RGD Symbol;Acc:1303119]
Coordinates
chr3:46721459-46726050:-
Coord C1 exon
chr3:46725971-46726050
Coord A exon
chr3:46722379-46722583
Coord C2 exon
chr3:46721459-46721705
Length
205 bp
Sequences
Splice sites
3' ss Seq
TCACTGTTTCCCCCCTTTAGAAT
3' ss Score
11.2
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTGGCTGTGCCTGGAGTGGTGCAGAAACCTGCTCAGACTGCCTGCTCACAGGACCTCACTGCGCCTGGTGCTCCCAGGAG
Seq A exon
AATTTCACCCACCTGTCCGGAGCTGGCGAAAGGTGCGACACCCCCGAGAATCTTTTAGCCAAAGGATGTCAGTTACCCTTCATCGAAAACCCTGTCTCCCAAGTAGAAATACTTCAAAATAAGCCTCTCAGCGTAGGTCGACAGAAAAACAGTTCTGACATTGTTCAGATTGCTCCTCAAAGCTTGGTTCTTAAGTTGAGACCAG
Seq C2 exon
GGGGTGAGCAGACTCTGCAAGTGCAGGTCCGCCAGACGGAAGATTACCCAGTAGATCTGTATTACCTCATGGACCTCTCGGCCTCCATGGATGATGACCTCAACACAATCAAAGAGCTTGGCTCCCGGCTGGCCAAAGAGATGTCTAAATTAACCAGCAACTTTAGACTGGGCTTTGGCTCTTTTGTGGAAAAGCCCGTTTCTCCTTTTATGAAAACAACACCAGAGGAAATCACCAACCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008346-'7-5,'7-3,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.096
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=63.0)
A:
PF0036213=Integrin_beta=FE(16.0=100)
C2:
PF0036213=Integrin_beta=FE(19.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTGCTCAGACTGCCTG
R:
TGCAAGGGTTGGTGATTTCCT
Band lengths:
303-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]