DreEX6016082 @ danRer10
Exon Skipping
Gene
ENSDARG00000056767 | itgb3a
Description
integrin beta 3a [Source:ZFIN;Acc:ZDB-GENE-071207-1]
Coordinates
chr3:19474454-19477247:+
Coord C1 exon
chr3:19474454-19474539
Coord A exon
chr3:19474658-19474862
Coord C2 exon
chr3:19476995-19477247
Length
205 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTGTGTATCTGTCAGGTC
3' ss Score
8.4
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GCTCTAATATTTGCACTTCTAGAGGAGTCAGTACCTGTAAAGAATGTCTTTCGATTCACCCGACTTGTGCCTGGTGCTCTCAGGAG
Seq A exon
GTCTTTCAAAAGGGAGGGTCGGCCCTGTCTCGCTGTGATCTGAAAGACAATATCATTCAGTCTGGATGTTCTGGGAAGTTTATTGAGTTTCCGGTCAGCAGTGTGAAGATAGTTGAGAACATACCTCTGAGTGACAAGGCTGGGGGTTCAGGCAGTGACATCACTCAGATCCAACCTCAAAAAATACAGCTCACCCTCAGGCCAG
Seq C2 exon
ATGATTCCAGGAAATTCACCGTCACAGTGAAGCAGGTTGCTGATTACCCGGTTGACCTGTACTACCTGATGGACATGACCAACACCATGAGGAAGAACCTGCAGACACTATATACTCTGGGCAATAATCTGGCCGGAGCTTTACGTGGCGTCACCAGTAACCTGCGCATGGGATTTGGAGCATTTGTAGACAAAACTGTCTCACCGTACATGTACACTTACCCACCAGAGGTCATCACGAATCCGTGCTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056767-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=58.6)
A:
PF0036213=Integrin_beta=FE(15.9=100)
C2:
PF0036213=Integrin_beta=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTCTAGAGGAGTCAGTACCT
R:
TGACCTCTGGTGGGTAAGTGT
Band lengths:
308-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]