BtaEX0018169 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009987 | INTB3
Description
Bos taurus integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) (ITGB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206490]
Coordinates
chr19:46986819-47000215:+
Coord C1 exon
chr19:46986819-46986904
Coord A exon
chr19:46998359-46998554
Coord C2 exon
chr19:46999963-47000215
Length
196 bp
Sequences
Splice sites
3' ss Seq
CCTGGGCCTCTGTCTTACAGGCG
3' ss Score
10.13
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGCCCAACATCTGTGCCACACGAGGTGTGAGCTCCTGCCAGCAATGTCTGGCTGTGAGTCCCACATGTGCCTGGTGCTCAGATGAG
Seq A exon
GCGCTGCCTCCAGGCTCGCCCCGCTGTAACTTGAAGGAGAACCTGCTGAAGGATAACTGCCACCCGGAGTCCATCGAGTTCCCTATCAGCGAGGCCAGAATCCTGGAGGCCAGGCCCCTCAGTGACAAGGGCACTGGAGACAGCTCCCAGATTACCCAAGTCAGTCCCCAGAGGATTGCCCTCCGCCTACGGCCAG
Seq C2 exon
ATGATTCGAAGATTTTCTCCGTCCAAGTTCGGCAGGTGGAAGATTACCCTGTGGACATCTACTACTTAATGGACTTGTCTTACTCCATGAAGGATGACCTGCGGAACATCCAGAACCTGGGTACCAAGCTGGCCTCCCAGATGCGTAAGCTCACCAGTAACCTGCGGATTGGCTTCGGGGCCTTTGTGGACAAGCCCGTGTCACCATACATGTATATTTCTCCACCAGAGGCTATCAGAAACCCTTGCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009987-'3-5,'3-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.136 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=58.6)
A:
PF0036213=Integrin_beta=FE(15.3=100)
C2:
PF0036213=Integrin_beta=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGTCTGGCTGTGAGTCCC
R:
GACACGGGCTTGTCCACAAAG
Band lengths:
247-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development