MmuEX6090372 @ mm10
Exon Skipping
Gene
ENSMUSG00000020689 | Itgb3
Description
integrin beta 3 [Source:MGI Symbol;Acc:MGI:96612]
Coordinates
chr11:104623411-104633650:+
Coord C1 exon
chr11:104623411-104623496
Coord A exon
chr11:104632174-104632369
Coord C2 exon
chr11:104633398-104633650
Length
196 bp
Sequences
Splice sites
3' ss Seq
TCGGGCTCTTCTCTTCATAGACT
3' ss Score
8.34
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGTCCAACATCTGTACCACACGAGGCGTGAACTCCTGCCAGCAGTGTCTGGCTGTGAGTCCTGTGTGTGCCTGGTGCTCAGATGAG
Seq A exon
ACTTTGTCTCAGGGCTCACCCCGATGTAACCTGAAGGAGAACCTGCTGAAGGACAATTGTGCTCCAGAGTCTATTGAGTTCCCAGTCAGTGAGGCCCAGATCCTGGAGGCTAGGCCACTCAGCAGCAAGGGCTCTGGAAGCAGCGCCCAGATCACTCAAGTCAGCCCTCAGAGGATTGCCCTTCGACTACGGCCAG
Seq C2 exon
ATGATTCGAAGATCTTCTCACTTCAAGTGCGGCAGGTGGAGGATTACCCCGTGGACATCTACTACTTGATGGACCTGTCTTTCTCCATGAAGGATGATCTGTCCAGCATCCAGACCCTGGGTACCAAGTTGGCCTCTCAGATGCGCAAGCTTACTAGCAACCTTCGGATTGGCTTTGGGGCCTTCGTGGACAAGCCTGTATCGCCGTACATGTACATCTCCCCACCACAGGCAATCAAAAACCCCTGTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020689-'5-11,'5-5,10-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=58.6)
A:
PF0036213=Integrin_beta=FE(15.3=100)
C2:
PF0036213=Integrin_beta=FE(19.8=100)
Main Skipping Isoform:
ENSMUST00000021028fB11658
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCTGGCTGTGAGTCCTG
R:
GTACGGCGATACAGGCTTGTC
Band lengths:
253-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types