RnoEX0045208 @ rn6
Exon Skipping
Gene
ENSRNOG00000048449 | Itgb3
Description
integrin subunit beta 3 [Source:RGD Symbol;Acc:628868]
Coordinates
chr10:92685440-92697322:+
Coord C1 exon
chr10:92685440-92685484
Coord A exon
chr10:92695855-92696013
Coord C2 exon
chr10:92697070-92697322
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTGGGTTCTTATCCTCATAGTCT
3' ss Score
5.68
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
CAGTGTCTGGCCGTAAGTCCCGTGTGTGCCTGGTGCTCAGATGAG
Seq A exon
TCTCTGCCTCAGAACTCGCCCCGCTGTAACCTGAAAAAGAACCTGCTGAAGGATAAGTGCTCCCCAGAGTCTATTGAGTTCCCAGTCAGCGAGGCCCAGATCCTGGAAGCTCTTCCGCTCAGCAGCAAGGGCTCAGGAGACAGCGCCCAGATCACTCAG
Seq C2 exon
ATGATTCGAAGATCTTTTCACTCCAAGTGCGGCAGGTGGAGGATTACCCTGTAGACATCTACTACTTGATGGATCTGTCTTTCTCCATGAAGGATGATCTGTCCAGCATCCAGACCCTGGGTACCAAGTTGGCCTCTCAGATGCGCAAGCTTACCAGCAACCTTCGGATTGGCTTTGGGGCCTTTGTGGACAAGCCCGTGTCTCCATACATGTTCATCTCCCCACCACAGGCGATCAAAAACCCCTGTTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048449-'8-6,'8-5,9-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(3.3=100)
A:
PF0036213=Integrin_beta=FE(15.4=100)
C2:
PF0036213=Integrin_beta=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTGGTGCTCAGATGAG
R:
CCTGTGGTGGGGAGATGAACA
Band lengths:
251-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]