DreEX6069527 @ danRer10
Exon Skipping
Gene
ENSDARG00000045070 | itgb3b
Description
integrin beta 3b [Source:ZFIN;Acc:ZDB-GENE-071207-2]
Coordinates
chr12:26345845-26348598:+
Coord C1 exon
chr12:26345845-26345930
Coord A exon
chr12:26348061-26348265
Coord C2 exon
chr12:26348346-26348598
Length
205 bp
Sequences
Splice sites
3' ss Seq
GAATGTGAAATGTTTGTTAGGAT
3' ss Score
3.69
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GTTCTAACGTCTGTACTTCTCGAGGAGCCAGTACATGTCAGCAGTGCCTGGCTGTGCATCCAACCTGTGCCTGGTGCTTTCAAGAG
Seq A exon
GATTTTGGACAAGATGTTCCTGGCTCTTCCCGATGTGACCTGAAAAGGAACCTTGTAGAAGCAGGATGCAACAAGGGAGCTCTGGAGTATCCAACCAGCAAAATGCACGTAAAAGAGAATGAAGATCTCAGTGACAAGGCCTCAGGATCCACCACTGACGTCACCCAGATCCAACCTCAAAGCATACACATCTCTCTGAGACCCG
Seq C2 exon
ATGATTCGCAGGTTTTCAAGCTGAAAGTCCGACAGGTAGAGGACTACCCTGTGGATTTGTACTATCTGATGGACCTGTCCTACTCCATGAATGACGACTTGTCTCAGTTGAGACGGCTGGGGCGAGGCCTGGCTGAAGAGATGAGCAAAACCACTAGTAATCTGCGCATGGGCTTTGGGGCTTTTGTGGATAAACCTGTGTCCCCGTACATGTACATCTCCCCTGAGGAAGCCGTGTTAAATCCCTGCTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045070-'5-4,'5-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.203 C2=0.024
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=58.6)
A:
PF0036213=Integrin_beta=FE(15.9=100)
C2:
PF0036213=Integrin_beta=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCAGTACATGTCAGCA
R:
GGCTTCCTCAGGGGAGATGTA
Band lengths:
297-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]