GgaEX0000332 @ galGal3
Exon Skipping
Gene
ENSGALG00000000379 | F1NS08_CHICK
Description
NA
Coordinates
chr27:2210956-2216744:+
Coord C1 exon
chr27:2210956-2211037
Coord A exon
chr27:2214642-2214834
Coord C2 exon
chr27:2216492-2216744
Length
193 bp
Sequences
Splice sites
3' ss Seq
GACCATGTTCTGTCCCACAGGTG
3' ss Score
12.07
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TAACATCTGCGCTACCCGAGGGGTGACCTCCTGCAAGCAGTGCCTGGCCGTCAGCCCCCTCTGTGCATGGTGCTCTGCAGAG
Seq A exon
GTGGTGGCACAGTCGACCCCACGTTGCGACCTGTTTGCCAACCTCCTGCAGAACGGCTGCGGGAGGGACTTCATTGAGTTTCCCAGGAGCAGCATCACAGTCCTGGAGGAGCGGCCGCTCAGTGATAAGGGCTCAGGGGGGTCCACCACCACCCAAATGAGCCCCCAGAGGATCCAGCTGAACCTGCAACCAG
Seq C2 exon
ATGACTCCCAAATGTTCCGTGTCCACGTGCGCCAAGTGGAAGACTACCCTGTGGACATCTACTACCTGATGGACCTGTCCAACTCCATGAAGGACGATCTGAAGAACATCCAGAACCTGGGTACCAAGCTGGCCAGTGAGATGCGCAAGCTCACCAGCAACCTTCGCATCGGCTTTGGGGCCTTTGTGGACAAGCCCATTTCCCCTTACATGTACATCTCTCCTCCAGAAGCCATCAAGAACCCTTGCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000379-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.323 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=60.7)
A:
PF0036213=Integrin_beta=FE(15.1=100)
C2:
PF0036213=Integrin_beta=FE(19.9=100),PF0311810=RNA_pol_A_CTD=WD(100=42.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTCCTGCAAGCAGTG
R:
TTGTCCACAAAGGCCCCAAAG
Band lengths:
253-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]