GgaEX0000332 @ galGal4
Exon Skipping
Gene
ENSGALG00000000379 | ITGB3
Description
integrin beta-3 precursor [Source:RefSeq peptide;Acc:NP_989646]
Coordinates
chr27:2305873-2311660:+
Coord C1 exon
chr27:2305873-2305954
Coord A exon
chr27:2309559-2309751
Coord C2 exon
chr27:2311408-2311660
Length
193 bp
Sequences
Splice sites
3' ss Seq
GACCATGTTCTGTCCCACAGGTG
3' ss Score
12.07
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TAACATCTGCGCTACCCGAGGGGTGACCTCCTGCAAGCAGTGCCTGGCCGTCAGCCCCCTCTGTGCATGGTGCTCTGCAGAG
Seq A exon
GTGGTGGCACAGTCGACCCCACGTTGCGACCTGTTTGCCAACCTCCTGCAGAACGGCTGCGGGAGGGACTTCATTGAGTTTCCCAGGAGCAGCATCACAGTCCTGGAGGAGCGGCCGCTCAGTGATAAGGGCTCAGGGGGGTCCACCACCACCCAAATGAGCCCCCAGAGGATCCAGCTGAACCTGCGGCCAG
Seq C2 exon
ATGACTCCCAAATGTTCCGTGTCCACGTGCGCCAAGTGGAAGACTACCCTGTGGACATCTACTACCTGATGGACCTGTCCAACTCCATGAAGGACGATCTGAAGAACATCCAGAACCTGGGTACCAAGCTGGCCAGTGAGATGCGCAAGCTCACCAGCAACCTTCGCATCGGCTTTGGGGCCTTTGTGGACAAGCCCATTTCCCCTTACATGTACATCTCTCCTCCAGAAGCCATCAAGAACCCTTGCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000379-'3-8,'3-5,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.323 C2=0.000
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(50.0=89.3),PF0036213=Integrin_beta=PU(7.4=60.7)
A:
PF0143720=PSI=PD(46.0=35.4),PF0036213=Integrin_beta=FE(27.9=100)
C2:
PF0036213=Integrin_beta=FE(19.9=100),PF0311810=RNA_pol_A_CTD=WD(100=42.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTCCTGCAAGCAGTG
R:
TTGTCCACAAAGGCCCCAAAG
Band lengths:
253-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]