DreEX0040189 @ danRer10
Exon Skipping
Gene
ENSDARG00000002494 | itgb6
Description
integrin, beta 6 [Source:ZFIN;Acc:ZDB-GENE-100812-2]
Coordinates
chr11:11002449-11004589:+
Coord C1 exon
chr11:11002449-11002528
Coord A exon
chr11:11003885-11004083
Coord C2 exon
chr11:11004343-11004589
Length
199 bp
Sequences
Splice sites
3' ss Seq
TATTCAAAATATTTATTTAGAAC
3' ss Score
4.02
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGACGTGTTCTCAGATCAGTGCTCTCTCTTGTGACGATTGTCTGCAGCTCGGGCCACAGTGCGCTTGGTGCACACTACAG
Seq A exon
AACTTCACAGATTTTTTCCCAGTTGATGAGAGATGCGACACACCGGAGGCTCTTCTCCAGAAGGGATGCTCTGGCGAATTTGTGGAATTTCCCGTCACGAACGTCAAAGTACTGAAGGATCAAGGTTTAGGAAAGAACTCAGGCCACACCAATGTGTCATACATCGCACCGCAGAAGATGCGCCTCCAGCTTAGACCAG
Seq C2 exon
GAAGTCAGCTGACTTTTCAGATTCAAGTGCAGCAACCGAAGGACCATCCAGTGGACATTTATTACCTGATGGACTTGTCGGCGTCCATGTTTGATGATCTAAAAAAGATCAAAGACTTGGGTTCGACGCTCTCAAAAGAGATGGCTAATCTTACCAGTAAATTCAGACTAGGATTTGGCTCATTTGTGGAGAAACCCGTTCTGCCGTTCATCAAGATAACCCGCGAGGAGCTGGCCAATCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002494_MULTIEX1-3/11=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(48.1=92.6),PF0036213=Integrin_beta=PU(9.0=63.0)
A:
PF0143720=PSI=PD(48.1=37.3),PF0036213=Integrin_beta=FE(34.9=100)
C2:
PF0036213=Integrin_beta=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACGATTGTCTGCAGCTC
R:
GCAGAACGGGTTTCTCCACAA
Band lengths:
255-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]