BtaEX6009627 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37105806-37108165:+
Coord C1 exon
chr2:37105806-37106060
Coord A exon
chr2:37107022-37107236
Coord C2 exon
chr2:37108091-37108165
Length
215 bp
Sequences
Splice sites
3' ss Seq
AAAATGCCAAACTTTTGTAGGCC
3' ss Score
4.23
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CCTTTGCCAGAGTTGCCTCGTATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAG
Seq A exon
GCCAAAACAGCTCTTGGAGAACATTTGCTGAATGTTGGTGTGAATCGAGACAATGTTTCCGAGATTTTGCAGATTTTTATGGAAGCACACTGTGGACAGACTGAACTTACTGAAAGCCTGAAGACTAAAGCTTTTCAGGCTCACACTCCAGCACAGAAAGCCTCAGTTCTGGCTTTCCTGATCAATGAACTGGCATGCAGCAAGAGTGTGGTGAG
Seq C2 exon
TGAAATCGACAAGAACATTGATTATATGTCAAACTTAAGGAGAGATAAATGGGTGGTAGAAGGTAAACTCCGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
PF0334410=Daxx=PU(0.8=4.2)
C2:
PF0334410=Daxx=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGACTTGTTCTCTCTGGA
R:
GCGGAGTTTACCTTCTACCACC
Band lengths:
305-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]