HsaEX6016158 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160240117-160243118:-
Coord C1 exon
chr2:160242864-160243118
Coord A exon
chr2:160241666-160241880
Coord C2 exon
chr2:160240117-160240191
Length
215 bp
Sequences
Splice sites
3' ss Seq
AAAATGCCAAACTTTTATAGGCT
3' ss Score
4.12
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCTTTGCCAGAGTTGCCTCGTATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATAACAGGATACAAG
Seq A exon
GCTAAAACAGCTCTTGGAGAACATTTGCTGAATGTTGGTGTGAATCGAGACAATGTTTCCGAGATTTTACAGATATTTATGGAAGCCCACTGTGGACAAACTGAGCTTACTGAAAGTCTGAAGACCAAAGCTTTTCAGGCTCACACTCCAGCACAGAAAGCTTCAGTCCTGGCTTTCCTGATCAATGAACTGGCATGCAGCAAGAGTGTGGTCAG
Seq C2 exon
TGAAATCGACAAGAACATTGATTATATGTCAAACTTGAGGAGAGATAAATGGGTGGTAGAAGGTAAACTCCGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'40-40,'40-39,42-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGACTTGTTCTCTCTGGA
R:
GCGGAGTTTACCTTCTACCACC
Band lengths:
305-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)