RnoEX0014184 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45993720-45996633:-
Coord C1 exon
chr3:45996379-45996633
Coord A exon
chr3:45995257-45995399
Coord C2 exon
chr3:45993720-45993794
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATGTGTCCGAGGTTTTGCAGATT
3' ss Score
2.72
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGCTCTCTGGAACCACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAG
Seq A exon
ATTTTCATGGAAGCCCACTGTGGACAGACTGAGCTGACCGAGAGCCTGAAGACTAAAGCGTTTCAGGCTCACACTCCAGCACAGAAAGCGTCCATCCTGGCCTTCCTTGTTAATGAGCTGGCGTGTAGCAAGAGTGTGGTGAG
Seq C2 exon
TGAGATTGACAAGAACATTGAGTACATGTCCAACTTGAGAAGAGACAAGTGGGTGGTGGAAGGTAAACTCCGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'43-44,'43-43,44-44
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCTCATGGTGGTGCAG
R:
TCCACCACCCACTTGTCTCTT
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]