GgaEX0019020 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38211383-38213707:-
Coord C1 exon
chr7:38213453-38213707
Coord A exon
chr7:38212856-38213070
Coord C2 exon
chr7:38211383-38211457
Length
215 bp
Sequences
Splice sites
3' ss Seq
TTGAAACATCCTTCTTTTAGGCT
3' ss Score
8.62
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCTTTGCCAGAGCTGCCTCGCATCCCAGGCCTTGTTCTGTCTGGAAGCACATTTTCAGATTGTCTCATGATAGTACAGTTCTTGCGTAACTTTGGTAAAGTTCTTGGCTTTGACGTGAATACAGATGTGCCTTCCCTGAGTACTCTTCAAGAAGGTTTGCTGAACATAGGGGACAGCAGAGGAGAAGTACAGGACTTGCTTGTAAAGCTTGTCACTGCAGCTGTTTGTGATCCAGGACTTGTTACAGGATACAAG
Seq A exon
GCTAAAACTATTCTTGGGGAGCACTTACTGAATGTTGGCATCAATCGAGATAACGTGTCTGAGATTTTGCAGATATTTATGGAGGCTCATTGTGGGCAAACTGAGCTTACAGAGAGCTTGAAGACAAAAGCTTTTCAGGCACATACTCCAGCTCAGAAAGCAGCAGTGCTAGCTTTCCTTGTCAATGAGTTAGCTTGCAGCAAAAGTGTAGTCAG
Seq C2 exon
TGAAATTGATAAAAATATTGATTATATGTCGAACTTGAGGAGAGATAAATGGATGGTTGAAGGCAAACTTCGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_MULTIEX1-18/23=17-19
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=74.1)
A:
PF0334410=Daxx=PU(1.3=6.9)
C2:
PF0334410=Daxx=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCAGGCCTTGTTCTGTC
R:
AAGTTTGCCTTCAACCATCCA
Band lengths:
305-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]