DreEX0016648 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11740326-11743140:+
Coord C1 exon
chr6:11740326-11740577
Coord A exon
chr6:11741080-11741303
Coord C2 exon
chr6:11743066-11743140
Length
224 bp
Sequences
Splice sites
3' ss Seq
TTCGATGTGTCTTCTACCAGGCC
3' ss Score
8.38
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
CCGCTTCCGGGGGTTCCTCGTATCCCGGGTCTGGTTCTGCCTGGCAGTGTGTTTTCAGATTGCCTGATGGTGGTGCAGTTCCTGCGGAGCTTTGGGAAGGTGTTGGGCCTGGACTCCTCTGAGTTGCCCACTCTGGGGATCCTGCAGGAGGGGCTGCTCAACCTGGGCAACAGCATGGGCCAGGTGCAGGACCTGCTGGTGAGACTGCTCTCGTCTGCGGTGTCTGACCCAGGACTGCCTCAAGGACACAGG
Seq A exon
GCCAAGTCTATCTTGGGTGACCACCTGACCAATGTGGGTCTGAATCGGGACAATGTGTCAGAGGTTCTGCAGCTCTACATGGAGGCTCACTGCTCTCAGACTGATCTAGCGGATCTGACTCTGAGTTTGAGGACCAAAGCCTTCCAGGCCCACACGCCGGCTCAAAAAGCCTCTGTCCTGGCCTTCCTGGTCAATGAGCTCTCGTGCAGTAAAAGCGTGGTCAG
Seq C2 exon
TGAGATCGACAAAAGCCTGGAGCACATGAACGTGCTGAGGAAGGACGAGTGTATTGTGGAGGGCAAATTGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'33-29,'33-28,34-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.013 C2=0.077
Domain overlap (PFAM):
C1:
PF0279112=DDT=WD(100=73.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTATCCCGGGTCTGGTTC
R:
GCCCTCCACAATACACTCGTC
Band lengths:
300-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]