BtaEX6009634 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37071550-37076751:+
Coord C1 exon
chr2:37071550-37071615
Coord A exon
chr2:37073342-37073407
Coord C2 exon
chr2:37076707-37076751
Length
66 bp
Sequences
Splice sites
3' ss Seq
GACCTGTTTTCCATGCACAGGCA
3' ss Score
8.26
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GAAAAAATTAAGAGAATACAACAAATCAGAATGGAAAAAGAGCTTCGAGCCCAGCAAATTCTAGAG
Seq A exon
GCAAAAAAGAAAAAGAAGGAAGAAGCAGCAAATGCCAAATTATTGGAGGCCGAGAAACGAATAAAG
Seq C2 exon
GAAAAAGAAATGAGAAGACAGCAAGCTGTTCTTCTAAAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'29-33,'29-30,30-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=0.856 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAATACAACAAATCAGAATGGAA
R:
TGCTTTAGAAGAACAGCTTGCTGT
Band lengths:
97-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]