DreEX0016658 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11728136-11732549:+
Coord C1 exon
chr6:11728136-11728197
Coord A exon
chr6:11729248-11729313
Coord C2 exon
chr6:11732505-11732549
Length
66 bp
Sequences
Splice sites
3' ss Seq
GACCTGTTTTGCATTGGCAGGCA
3' ss Score
6.72
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCATCATGGCCGCAGAGGAGAGGAGAAAGCAAAAGGAGCAGCTGAAGATACTTAAACAGCAG
Seq A exon
GCAAAGCGGAAAAAGAGAGAGGAGGCTGCCAATGCCAAAATGTTGGAGGCGGAAAAGCGAATAAAG
Seq C2 exon
GAGAAGGAGATGAGACGCCAACAGGCTGTTATTCTCAAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782_MULTIEX1-2/5=C1-3
Average complexity
C2
Mappability confidence:
80%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGGCCGCAGAGGAGAG
R:
TGGTGCTTGAGAATAACAGCCT
Band lengths:
104-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]