GgaEX0028898 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36084004-36085194:-
Coord C1 exon
chr7:36085129-36085194
Coord A exon
chr7:36084674-36084739
Coord C2 exon
chr7:36084004-36084048
Length
66 bp
Sequences
Splice sites
3' ss Seq
GATCTATTTTGCGTGCACAGGCA
3' ss Score
7.98
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GAAAAGATTAAGCGGATCCAGCAAATCAGAATGGAGAAAGAACTTCGAGCTCAACAGATTTTAGAG
Seq A exon
GCAAAAAAGAAGAAGAAAGAAGAAGCAGCAAATGCTAAATTACTGGAGGCTGAAAAACGAATAAAG
Seq C2 exon
GAAAAAGAGATGCGAAGGCAACAAGCTGTTCTTCTCAAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_MULTIEX3-1/11=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=0.955 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGATTAAGCGGATCCAGCA
R:
CTGGTGCTTGAGAAGAACAGCT
Band lengths:
111-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]