HsaEX0007729 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160253856-160257175:-
Coord C1 exon
chr2:160257110-160257175
Coord A exon
chr2:160255340-160255405
Coord C2 exon
chr2:160253856-160253900
Length
66 bp
Sequences
Splice sites
3' ss Seq
GACCTGTTTTGCATGCACAGGCT
3' ss Score
6.55
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GAAAAAATTAAGAGAATACAGCAAATCAGAATGGAAAAAGAACTTCGAGCTCAGCAAATTCTAGAG
Seq A exon
GCTAAAAAGAAAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGAGAAACGAATAAAG
Seq C2 exon
GAAAAAGAAATGAGAAGACAACAAGCTGTTCTTCTGAAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'32-33,'32-32,33-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=0.960 C2=0.801
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAATACAGCAAATCAGAATGGA
R:
TGTTTCAGAAGAACAGCTTGTTGT
Band lengths:
97-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)