BtaEX6009650 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37300955-37316498:-
Coord C1 exon
chr2:37316368-37316498
Coord A exon
chr2:37315158-37315344
Coord C2 exon
chr2:37300955-37301218
Length
187 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCGTTCGTCTTGCAGTGC
3' ss Score
11.25
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAGCAAAGGCCGATAATGAACCGAGCTGTTCGCCGGCAGCTCAAGAACTGTTGACAAGACTGGGATTTTTACTGGGAGAAGGGATCCCAAGTGCCACACACATAACCATTGAAGAAAAAAATGAAACCATG
Seq A exon
TGCACAGCTCTGAGCCAAGGCATCAGCCCTTGCTCCACTCTTACGAGCAGCACCGCCTCTCCTAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGTCCCTGTGAGACCATTAGCAGCCCTAGCTCCACCCTGGAAAGCAAGGACAGTGGAATTATAG
Seq C2 exon
CCACAATTACAAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTTTGGAATGGAATAAGGACGGAAGCCTAAGGTTAGGGGTACAGAAGGGAGTGCTCCATGACCGCAGGGCAGATAATTGCTCCCCAGTGGCAGAAGAGGAGCCCCCTGGGCCAGCGGAGAGCGTGCTGCCCAAAGCCGAAGCCTCAGTTGGAGATGGTCCGGTCCCTTATTCTCAGAGCTCCAGCTCGCTAATAATGCCACGGCCCAACTCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'16-20,'16-18,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=0.619 C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCCGATAATGAACCGAGC
R:
GGGGAGCAATTATCTGCCCTG
Band lengths:
256-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]