RnoEX0088534 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45832486-45858105:+
Coord C1 exon
chr3:45832486-45832590
Coord A exon
chr3:45844937-45845123
Coord C2 exon
chr3:45857842-45858105
Length
187 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCCTTCCCCTTGCAGTGC
3' ss Score
12.96
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCCCGTCAGGAAGCCCAAGTATGTGGAAAGCCCCAGGGTACCAGGAGATCCAGTTATGATTCCCTTCAGAGAAGGGTCCAAGCCCGCAGAGCCCATCGAGACTG
Seq A exon
TGCACAGCCCTGAGTCAAGGCATCAGTCCTTGCTCCACACTGACAAGCAGCACCGCCTCTCCCAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGCCCCTGTGAGACCATTAGCAGCCCTAGTTCCACCCTGGAGAGCAAGGACAGTGGAATTATAG
Seq C2 exon
CCACAATTACCAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTCTGGAATGGAATAGAGATGGAAGCCTGAGGTTAGGGGTTCAGAAGGGAGTGCTTCATGACCGAAGGGCTGATAACTGTTCCCCAGTGGCAGAAGAGGAGACTACTGGGTCGGCGGAGAGCGTACTGCCCAAGGCGGAATCCTCAGCTGGAGATGGTCCGGTCCCTTATTCTCAGAGCTCAGGCTCGCTAATAATGCCACGGCCCAACTCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394_MULTIEX1-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.587 C2=0.910
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCAGGAAGCCCAAGTATG
R:
AGTCTCCTCTTCTGCCACTGG
Band lengths:
251-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]