GgaEX6043384 @ galGal3
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38137689-38139827:+
Coord C1 exon
chr7:38137689-38137810
Coord A exon
chr7:38138710-38138899
Coord C2 exon
chr7:38139570-38139827
Length
190 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCTTCACATTGCAGTGT
3' ss Score
8.85
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
CAAAGCCTGATAAAGACTCAAGCTGTTCTCCTGCAGCACAAGAATTGATGACGAGATTGGGTTTTTTACTAGGAGAAGGGATACCAACATCTGCTCATATAGAAGAAAAAAATGAATCCATG
Seq A exon
TGTACTATAGCCAGTCAAGGAGTCAGTCCATGTTCTACCCTCACAAGCAGCACTACATCTCCAAGCACTGATAGCCCATGCTCAACTCTTAATAGCTGTACTGGCAAAGCAGCAGCCAACAAAGGTAGTCCCTGTGAAACCATGAGAAGCCCTAGCTCCACCCTGGAGAGCAAGGACAGTGGAATAATAG
Seq C2 exon
CAACTGTAACAAGTTCATCAGAAAATGATGATCGTAGTGGATCCAGTTTGGAATGGAGCAAGGATGGGAGTCTCAGAGCTGGAGCACATCGAGGAATTGGTCACGATCGAAGAACTGACAATTGTTCACCAGTTGCAGAAGAGGAGGCTGTTGGATCTGCTGAGAATTTGCCAAAGGAAGTACCAACAGGAGAGGGTCCTGTTCCTTATACTCAGAGTTCTGGATCTTTAATAATGCCTCGTCCAAACTCTGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=0.797 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCTCCTGCAGCACAAGA
R:
CAGCCTCCTCTTCTGCAACTG
Band lengths:
250-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]