DreEX0077207 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11865229-11875554:-
Coord C1 exon
chr6:11875433-11875554
Coord A exon
chr6:11869521-11869731
Coord C2 exon
chr6:11865229-11865489
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTTCAATGTAGTGT
3' ss Score
8.79
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
AGCTGCTCTCGCCGGCCGAGTCTGGCTCTTCTCCGGCCGTCCAGGAGCTCATGACACGATTGGGCTTCCTGCTGGGAGACGCCATCCCCACCTCATCACAAACAAACATGGAGGACAAACAG
Seq A exon
TGTATAGTGTCCAGTCAGGGCGTGAGTCCCTGCTCCACTCTGACCAGCAGTACGGCGTCTCCCAGCGCCGAGAGCCCCTGCTCCACCTTACCTGAGAGCTCCTCCAACAGCAGAGCTCCGGTCATCTGCTCCAGCGCCTGCTCCACTGCCACCTCCACCGTCATCACCACACCCAGCTCAACCCTGGAGAGCAAAGACAGTGGAATCATAG
Seq C2 exon
CAACAGTCACCAGTTCTAGTGAGAATGAAGAGCGCTGTGGATCTAGTCTGGAGTGGGCGAAAGATGGAGGTGCGGGTGTAAGAGGCGAGAGCGGGCGTAGCTGTATTCCCATCACTCCAGAGGAGCCCACGGTCTCTAGTGAAGTTCAACCGAGGACAAGCAGCACAGGCGGGGCGGCACCTGTTGTGACATCACCACTGGATGGACCAATCACGTATCACAGTGCCTCTTTGGTTATGCCACGCCCAAATTCTGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=0.479 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCATGACACGATTGGG
R:
GGCACTGTGATACGTGATTGGT
Band lengths:
306-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]