BtaEX6009664 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37246467-37250089:-
Coord C1 exon
chr2:37249966-37250089
Coord A exon
chr2:37249448-37249623
Coord C2 exon
chr2:37246467-37246599
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGAATGGGCTTCTCTTTCAGGTG
3' ss Score
10.52
5' ss Seq
ACCGTAGGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
ATTGTTAGGTTGCTCTTGGACCACGGCTGTGATGTGAACCTAAGTGACAAGCAGGGCCGGACGCCCCTCATGGTGGCTGCTTGCGAAGGGCACCTGAGCACCGTGGAATTTCTCCTTTCAAAAG
Seq A exon
GTGCCACCCTTTCTTCTCTGGACAAGGAGGGTCTGTCGGCATTAAGCTGGGCATGTCTGAAAGGTCACAGGGCTGTTGTCCAGTTCCTAGTGGAGGAGGGAGCCGAGATCGACCAGACGGACAAGAACGGCCGCAGCCCCCTGGACCTGGCCGCCTTCTACGGCGACGCGGAGACC
Seq C2 exon
GTGCTGTATCTGGTGGACAAGGGGGCTGTGATTGAGCACGTGGACCACAGCGGTATGCGGCCCTTGGACAGAGCCATTGGTTGTCGGAACACATCTGTAGTGGTTACGCTGCTGAGAAAAGGAGCCAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'38-43,'38-42,39-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGGTTGCTCTTGGACCACG
R:
TTGGCTCCTTTTCTCAGCAGC
Band lengths:
248-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]