RnoEX0088532 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45906545-45909150:+
Coord C1 exon
chr3:45906545-45906668
Coord A exon
chr3:45907322-45907497
Coord C2 exon
chr3:45909018-45909150
Length
176 bp
Sequences
Splice sites
3' ss Seq
AAGTGGACTCTTCTCTTCAGGTG
3' ss Score
6.97
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTCGTGCAATTGCTTTTGGATCGGGGCTGTGACGTGAACCTGAATGACAAGCAGGGTCGGACACCTCTCATGGTGGCTGCCTGTGAAGGACACCTGAGCACCGTGGAATTTCTCCTCTCCAAAG
Seq A exon
GTGCTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCGGCATTGAGCTGGGCTTGTCTGAAGGGTCACAGGGCAGTGGTCCAGTATCTGGTCGAAGAAGGAGCAGAAATAGACCAAACAGACAAAAATGGCCGTACTCCCTTGGACCTGGCCGCCTTCTATGGTGATGCAGAGACT
Seq C2 exon
GTGCTGTACCTGGTGGAGAAAGGAGCCGTGATAGAACACGTGGACCACAGTGGGATGCGCCCCCTGGACAGAGCCATCGGTTGCCGAAACACCGCTGTAGTGGTTACACTGCTGAGAAAAGGAGCCAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-'62-36,'62-35,63-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGCTTTTGGATCGGGGCT
R:
GGCTCCTTTTCTCAGCAGTGT
Band lengths:
243-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]