MmuEX6101445 @ mm10
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59834581-59837218:+
Coord C1 exon
chr2:59834581-59834704
Coord A exon
chr2:59835392-59835567
Coord C2 exon
chr2:59837086-59837218
Length
176 bp
Sequences
Splice sites
3' ss Seq
GGACTCTTCCCTTCCCTCAGGTG
3' ss Score
9.89
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTTGTCCGATTGCTTTTGGATCGCGGCTGCGACGTGAACCTGAGTGACAAGCAGGGTCGAACACCTCTCATGGTGGCTTCCTGTGAGGGACACCTGAGCACCGTGGAATTCCTCCTCTCAAAAG
Seq A exon
GTGCTGCTCTTTCTTCCCTGGACAAAGAGGGCCTGTCAGCATTGAGCTGGGCTTGTCTGAAGGGTCACAGGGCAGTGGTCCAGTACCTGGTCGAAGAAGGAGCAGAGATAGACCAGACAGACAAAAACGGCCGTACTCCCTTGGACCTGGCCGCTTTCTATGGTGATGCAGAGACT
Seq C2 exon
GTGCTGTATCTGGTGGAGAAGGGAGCCGTGATAGAACATGTGGACCACAGTGGGATGCGCCCCCTGGACAGAGCCATCGGCTGTCGAAACACTGCTGTAGTGGTTACCCTGCTTAGAAAAGGAGCCAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-'85-60,'85-59,86-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
PF127962=Ank_2=PD(10.1=11.9),PF127962=Ank_2=PU(47.3=74.6)
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGATTGCTTTTGGATCGC
R:
TGGCTCCTTTTCTAAGCAGGG
Band lengths:
248-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types