GgaEX1057147 @ galGal3
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38157709-38160662:+
Coord C1 exon
chr7:38157709-38157832
Coord A exon
chr7:38157954-38158129
Coord C2 exon
chr7:38160530-38160662
Length
176 bp
Sequences
Splice sites
3' ss Seq
AGCTGATTTTCATTTTATAGGTG
3' ss Score
8.63
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATTGCTAAACTTCTTCTGGAGCATGGGTCTGATGTGAATTTAAGCGACAAGCAAGGCAGAACTCCACTCATGGTGGCTGCTTGTGAAGGACATTTGAGCACTGTGGAATTTCTCCTTTCTGCAG
Seq A exon
GTGCAACTATTTCATCTCTGGACAAAGAAGGGCTGACAGCTTTGGGCTGGGCATGTCTAAAAGGCCACAGAGAAGTGGTTCAGTATTTAGTTGAGAAAGGCGCAACAGTTGATCAGACAGACAAAAATGGACGAACACCTCTAGACCTGGCAGCTTTTTATGGAGATGCTGATATT
Seq C2 exon
GTGCAGTATTTGGTAGAAAAAGGAGCAATGATTGAGCATGTTGACCACAGCGGCATGCGGCCACTGGACAGAGCCATTGGATGTCGTAATACATCAGTGGTGGTTATGCTCCTGAGGAAAGGAGCTAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'23-25,'23-23,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTGGAGCATGGGTCTGA
R:
AGTTTAGCTCCTTTCCTCAGGA
Band lengths:
244-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]