BtaEX6009765 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001887 | STAM2
Description
Bos taurus signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 (STAM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076106]
Coordinates
chr2:44153333-44155953:+
Coord C1 exon
chr2:44153333-44153427
Coord A exon
chr2:44155652-44155731
Coord C2 exon
chr2:44155866-44155953
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTACTTTGTTTCCATAGCAGCTG
3' ss Score
5.84
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
TGATGCTAATTGGTGGAAAGGAGAAAATCACAGAGGAATTGGACTCTTCCCATCTAATTTTGTAACATGTAATTTAAACATAGAATCAGAGGCAG
Seq A exon
CTGTGGACAAATTGAATATAATTGATGATGAGGAGGAGGAAATTAAGAAATCAGAGCCTGAGCCTGTTTATATAGATGAG
Seq C2 exon
GATAAGATGGATAGAGCCCTGCAGGTACTGCAGAGTATAGATCCAACAGATTCAAAACCAGATTCTCAAGACCTCTTGGACTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001887-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.519 C2=0.633
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCTAATTGGTGGAAAGGAGA
R:
AGAGGTCTTGAGAATCTGGTTTTGA
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]