GgaEX6043309 @ galGal3
Exon Skipping
Gene
ENSGALG00000012513 | STAM2
Description
NA
Coordinates
chr7:37036805-37037656:-
Coord C1 exon
chr7:37037562-37037656
Coord A exon
chr7:37037061-37037143
Coord C2 exon
chr7:37036805-37036889
Length
83 bp
Sequences
Splice sites
3' ss Seq
ACCCTTGTTTCTTCTATCAGCAA
3' ss Score
7.83
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
TGACACCAATTGGTGGAAGGGTGAAAATCATCGAGGAGTGGGACTGTTTCCATCTAATTTTGTGACTTCTGATTTAAATGTTGAACCTGAGGCAG
Seq A exon
CAACTGTAGATAACAGCTGTGTTCCTGAGGATGCTACAGAAGAAATTAAGAAAGCAGAACCTGAGGCAGTTTATATAGATGAG
Seq C2 exon
GATAAGATGGATAAAACGCTACAGGTGCTTCAGAGTATAGATCCTACAGACCTAAATCTTGATTCAGATCTTCTAGACTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012513-'14-13,'14-11,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.786 C2=0.034
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAAGGGTGAAAATCATCG
R:
CTGAGTCTAGAAGATCTGAATCAAGA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]