MmuEX6101334 @ mm9
Exon Skipping
Gene
ENSMUSG00000055371 | Stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:MGI Symbol;Acc:MGI:1929100]
Coordinates
chr2:52566952-52568724:-
Coord C1 exon
chr2:52568630-52568724
Coord A exon
chr2:52567177-52567259
Coord C2 exon
chr2:52566952-52567039
Length
83 bp
Sequences
Splice sites
3' ss Seq
AACTTATTTTGTTTCTGTAGCAA
3' ss Score
7.07
5' ss Seq
GAGGTATCG
5' ss Score
8.1
Exon sequences
Seq C1 exon
TGACGCCAACTGGTGGCAAGGAGAAAATCACAGAGGAACAGGACTCTTCCCCTCCAACTTTGTAACGACTGACTTAAGCACAGAGGTTGAGACAG
Seq A exon
CAACGGTGGACAAATTGAATGTAATTGATGATGATGTGGAGGAAATTAAGAAATCAGAACCTGAGCCTGTTTATATAGATGAG
Seq C2 exon
GGTAAAATGGATAGAGCCCTGCAGATTCTCCAGAGCATAGATCCAAAAGAGTCAAAACCCGACTCCCAAGACCTCTTGGACTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055371-'14-12,'14-11,17-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.357 C2=0.667
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NO
C2:
PF031279=GAT=PU(32.9=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTGGTGGCAAGGAGAAA
R:
AAGAGGTCTTGGGAGTCGGG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: