RnoEX6016877 @ rn6
Exon Skipping
Gene
ENSRNOG00000027447 | Stam2
Description
signal transducing adaptor molecule 2 [Source:RGD Symbol;Acc:1311497]
Coordinates
chr3:38241245-38243521:-
Coord C1 exon
chr3:38243427-38243521
Coord A exon
chr3:38241465-38241547
Coord C2 exon
chr3:38241245-38241332
Length
83 bp
Sequences
Splice sites
3' ss Seq
AACTTATTTTGTTTCTGTAGCAA
3' ss Score
7.07
5' ss Seq
GAGGTATCG
5' ss Score
8.1
Exon sequences
Seq C1 exon
TGATGCCAACTGGTGGGAAGGAGAAAATCACAGAGGAGCAGGACTCTTCCCCTCCAGCTTCGTAACGACTGATTTAAGCACCGAGGTTGAGGCGG
Seq A exon
CAACAGTGGACAAATCGAATGTAATTGATGACGATGTGGAGGAAATTAAGAAGTCGGAACCTGAGCCTGTTTATATAGATGAG
Seq C2 exon
GGTAAAATGGACCGAGCCCTGCAGATTCTCCAGAGCATAGACCCAAAAGATCCAAAACCCGACTCCCAGGACCTCTTAGACTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027447-'16-13,'16-11,18-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.571 C2=0.667
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTGGTGGGAAGGAGAAA
R:
CTAAGAGGTCCTGGGAGTCGG
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]