DreEX6037526 @ danRer10
Exon Skipping
Gene
ENSDARG00000005318 | stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:ZFIN;Acc:ZDB-GENE-041114-64]
Coordinates
chr9:38248804-38249275:+
Coord C1 exon
chr9:38248804-38248898
Coord A exon
chr9:38248983-38249065
Coord C2 exon
chr9:38249188-38249275
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTGAATTTTCTTTCCTGTAGTGA
3' ss Score
7.66
5' ss Seq
GAGGTATCT
5' ss Score
7.27
Exon sequences
Seq C1 exon
TGATCCAAATTGGTGGAAAGGCGAGAACCATAGAGGAGTAGGTCTCTTCCCATCAAACTTTGTCACCACCAACCTGAATGCTGAACCAGATCCTG
Seq A exon
TGATGTATGTTGAGAAGACAGTAGTCCCAGAGGAGCCAATTGTTGAAGTCAAAGCTGAACCTGAGCCTGTATATATAGATGAG
Seq C2 exon
GAGAAGATGGACAAAACTTTATACCTTCTCCAGAACACAGACCCTGCAGATGCCACACCCGACGGCCCAGAGCTGCTCACATTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005318-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.571 C2=0.767
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(39.1=54.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGTGGAAAGGCGAGAACC
R:
CTAATGTGAGCAGCTCTGGGC
Band lengths:
172-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]