BtaEX6009773 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44413234-44431078:+
Coord C1 exon
chr2:44413234-44413292
Coord A exon
chr2:44425178-44425287
Coord C2 exon
chr2:44430927-44431078
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTCCTATTCATAGGAT
3' ss Score
10.06
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTCACAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAG
Seq A exon
GATATCAATAACAAGAGTGACAGCTGACATTTCTCTTGCTAAGAGGTCTGTGCTAAATAATCCCAGCAAGAGAGCAATAATTGAACGTTCGAACACTCGGTCCAGCTTAG
Seq C2 exon
CGGAAGTACAAAGTGAAATTGAAAGAATCTTTGAGTTGGCAAGATCTTTGCAACTGGTTGTTCTTGATGCAGACACCATCAATCACCCAGCACAACTTATAAAGACCTCCTTAGCACCAATTATTGTTCATGTAAAAGTCTCATCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297-'15-13,'15-12,19-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
PF0062516=Guanylate_kin=FE(20.4=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGACATGATGCAGAAAGCC
R:
CTTTGGAGATGAGACTTTTACATGA
Band lengths:
210-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]