RnoEX6016870 @ rn6
Exon Skipping
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:37974044-37987334:-
Coord C1 exon
chr3:37987276-37987334
Coord A exon
chr3:37978523-37978632
Coord C2 exon
chr3:37974044-37974195
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTCCTCTTCCTAGGAT
3' ss Score
11.66
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTAACAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAG
Seq A exon
GATATCAATAACCAGAGTGACAGCTGACATTTCTCTTGCTAAGAGGTCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAACGTTCAAACACCAGATCCAGCCTAG
Seq C2 exon
CGGAAGTACAGAGTGAAATTGAAAGAATTTTCGAGTTGGCAAGATCTTTGCAATTGGTTGTTCTCGATGCAGACACCATCAATCACCCAGCACAGCTGATAAAGACATCGTTAGCGCCCATCATCGTCCACGTGAAGGTCTCGTCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666-'14-13,'14-12,16-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
PF0062516=Guanylate_kin=FE(20.4=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACAGACATGATGCAGAAAGCCC
R:
CTTTGGGGACGAGACCTTCAC
Band lengths:
210-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]