GgaEX1012554 @ galGal4
Exon Skipping
Gene
ENSGALG00000012511 | CACNB4
Description
voltage-dependent L-type calcium channel subunit beta-4 isoform c [Source:RefSeq peptide;Acc:NP_989675]
Coordinates
chr7:34840864-34846221:-
Coord C1 exon
chr7:34846163-34846221
Coord A exon
chr7:34843368-34843477
Coord C2 exon
chr7:34840864-34841015
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTTCTTGCTCGTAGGAT
3' ss Score
10.91
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGACAGACATGATGCAGAAAGCTCTCTTTGACTTCCTGAAGCACAGGTTTGATGGGAG
Seq A exon
GATATCAATAACCCGAGTGACAGCCGACATTTCTCTTGCTAAGAGGTCTGTTCTGAATAACCCAAGCAAGAGGGCAATAATTGAACGGTCAAACACACGATCCAGTTTAG
Seq C2 exon
CTGAAGTGCAGAGTGAGATTGAAAGAATCTTTGAGCTGGCCCGGTCCTTGCAGCTGGTTGTCCTGGATGCAGACACTATCAATCACCCCGCACAACTTATCAAGACATCTCTAGCACCAATTATTGTCCACGTTAAAGTGTCTTCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511_MULTIEX1-4/6=3-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.177 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
PF0062516=Guanylate_kin=FE(20.4=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGACATGATGCAGAAAGC
R:
TTTGGAGAAGACACTTTAACGTGGA
Band lengths:
210-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]