BtaEX6009786 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44725620-44727960:+
Coord C1 exon
chr2:44725620-44725724
Coord A exon
chr2:44726246-44726350
Coord C2 exon
chr2:44727856-44727960
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTGCCTCCTTCCCCTCAGTAC
3' ss Score
9.37
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
GTTAAGTATAAGGCTGATTTGAAGAAACTTCACAAACCTGTGACTGACATGAAGGAATCGCTAATAATGAACCATGTCTTGAATACAAGCCACCTTGCCAGTTCT
Seq A exon
TACCAGTACAAGAAGAACTATGAGAAGAGTAAAGGTCACTACCACACAATACCTGACAATCTGGAGCAGCTTCATCTAAAAGAGGCCACAGAATTACAGAGTATC
Seq C2 exon
GTGAAATACAAAGAAAAGTACGAAAAGGAACGAGGGAAGCCTATGCTAGATTTTGAAACACCAACGTACATCACTGCCAAGGAGTCTCAGCAGATGCAGAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'152-156,'152-155,153-156=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.400 C2=0.486
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATAAGGCTGATTTGAAGAAACT
R:
TCTGCATCTGCTGAGACTCCT
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]