GgaEX0018895 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36825253-36827668:-
Coord C1 exon
chr7:36827564-36827668
Coord A exon
chr7:36826667-36826771
Coord C2 exon
chr7:36825253-36825357
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTGACACCTTCCCCTTCAGTAC
3' ss Score
7.05
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GTGAAATACAAAGCAGATCTAAAGAAACTTCATAAGCCTGTCACAGACATGTCTGAGTCGCTGATCATGAACCATGTCCTGAATACAAGCCAACTTGCCAGTGCT
Seq A exon
TACCAGTACAAGAAGCAATATGAGAAGAGTAAGGGTCACTACCATATGGTGCCAGATAATCTTGAACAGGTTCATCTAAGGGAGGCATCAGAACTACAGAGCCAC
Seq C2 exon
GTGAAATACAAGGAAAAGTATGAGAAGGAAAAAGGCAAACCTATGCTGGACTTTGAAACTCCAACATACCTAACTGCAAAGGAATCTCAGCTCATGCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'130-130,'130-129,131-130
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.386 C2=0.333
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGCAGATCTAAAGAAACTTCA
R:
GCATGAGCTGAGATTCCTTTGC
Band lengths:
195-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]