RnoEX6016859 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37685393-37687742:-
Coord C1 exon
chr3:37687638-37687742
Coord A exon
chr3:37686835-37686939
Coord C2 exon
chr3:37685393-37685497
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCTCCTTCCCCTCAGTAC
3' ss Score
8.93
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
GTCAAATACAAGGCTGACCTGAAGAAACTCCACAAACCCGTGACTGACATGAAGGAATCCCTGATAATGCATCACGTCCTGAATACAAGCCAGCTCGCCAGCTCT
Seq A exon
TACCAGTACAAGAAGAACTATGAGAAGAGCAAAGGCCACTACCACACGATACCCGATAACCTGGAACAGCTACACCTCAAAGAAGCCACAGAGCTGCAGAGTATC
Seq C2 exon
GTGAAATACAAAGAAAAATATGAAAAAGAACGAGGCAAGCCCATGCTGGACTTTGAGACTCCAACATACATCACTGCCAAAGAGTCTCAGCAGATGCAGAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'139-148,'139-147,140-148=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.486 C2=0.686
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGACCTGAAGAAACTCCA
R:
TCTGCATCTGCTGAGACTCTT
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]