GgaEX0018895 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34698277-34700692:-
Coord C1 exon
chr7:34700588-34700692
Coord A exon
chr7:34699691-34699795
Coord C2 exon
chr7:34698277-34698381
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTGACACCTTCCCCTTCAGTAC
3' ss Score
7.05
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GTGAAATACAAAGCAGATCTAAAGAAACTTCATAAGCCTGTCACAGACATGTCTGAGTCGCTGATCATGAACCATGTCCTGAATACAAGCCAACTTGCCAGTGCT
Seq A exon
TACCAGTACAAGAAGCAATATGAGAAGAGTAAGGGTCACTACCATATGGTGCCAGATAATCTTGAACAGGTTCATCTAAGGGAGGCATCAGAACTACAGAGCCAC
Seq C2 exon
GTGAAATACAAGGAAAAGTATGAGAAGGAAAAAGGCAAACCTATGCTGGACTTTGAAACTCCAACATACCTAACTGCAAAGGAATCTCAGCTCATGCAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495_MULTIEX1-16/33=15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.571 C2=0.261
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
ENSGALT00000020417fB2251
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGCAGATCTAAAGAAACTTCA
R:
GCATGAGCTGAGATTCCTTTGC
Band lengths:
195-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]